OSSEC
Comprehensive Open Source HIDS. Not for the faint of heart. Takes a bit to get your head around how it works. Performs log analysis, file integrity checking, policy monitoring, rootkit detection, real-time alerting and active response. It runs on most operating systems, including Linux, MacOS, Solaris, HP-UX, AIX and Windows. Plenty of reasonable documentation. Sweet spot is medium to large deployments.
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